Bioinformatics Links
From Bioinformatics Core Wiki
Contents |
Microarray
- Microarray technology animation (Slow, but concept is clearly explained.)
- R and Bioconductor basic menu (Thomas Girke, UC Riverside)
- Advanced Analysis of Gene Expression by Aidong Zhang
Courses with audio or video
- Online Courses on Computational Genetics include Microarray experimental design and data analysis(some have video)
- MCB 140 General Genetics, UC Berkeley
- DNA from the BEGINNING (A resource for everyone from children to experts)
- various distribution Java Applets
- Unix and Perl course for Biologists
Biological Databases
- Nucleic Acid Research Database Issue and an article talk about it.
External Computing Resources
- High Performance Computing Systems: at Texas Advanced Computing Center, including a cluster of 62,976 AMD Opteron cores, Dell Clusters at NCSA, A tightly-coupled Cray XT3 MPP System at PSC, IBM Blue Gene at SDSC
- High performance computing resource allocation can be obtained through TeraGrid POPS. Here is a list of available computer resources at TeraGrid.
- NSF funded Petascale Computing Systems and the future Blue Water Petascale computing facility at NCSA.
Next Generation Sequencing
Short Read Assembly
Short Read Alignment
ELAND [Illiumina proprietary software]
